Serialized Form
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Package org.snpsift.annotate
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Class org.snpsift.annotate.MarkerFile
class MarkerFile extends org.snpeff.interval.Marker implements Serializable- serialVersionUID:
- -3649469013731964066L
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Serialized Fields
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fileIdx
long fileIdx
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Package org.snpsift.annotate.mem
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Class org.snpsift.annotate.mem.Fields
class Fields extends Object implements Serializable- serialVersionUID:
- 2024092801L
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Package org.snpsift.annotate.mem.arrays
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Class org.snpsift.annotate.mem.arrays.BoolArray
class BoolArray extends Object implements Serializable- serialVersionUID:
- 2024073104L
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Serialized Fields
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bytes
byte[] bytes
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Class org.snpsift.annotate.mem.arrays.EnumArray
class EnumArray extends StringArrayBase implements Serializable- serialVersionUID:
- 2024080900L
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Class org.snpsift.annotate.mem.arrays.PosIndex
class PosIndex extends Object implements Serializable- serialVersionUID:
- 2024073105L
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Serialized Fields
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positions
int[] positions
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size
int size
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Class org.snpsift.annotate.mem.arrays.StringArray
class StringArray extends StringArrayBase implements Serializable- serialVersionUID:
- 2024073106L
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Serialized Fields
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data
byte[] data
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index2offset
int[] index2offset
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offset
int offset
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Class org.snpsift.annotate.mem.arrays.StringArrayBase
class StringArrayBase extends Object implements Serializable- serialVersionUID:
- 20240731059L
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Serialized Fields
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currentIndex
int currentIndex
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Package org.snpsift.annotate.mem.database
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Class org.snpsift.annotate.mem.database.VariantDataFrame
class VariantDataFrame extends Object implements Serializable- serialVersionUID:
- 2024092701L
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Serialized Fields
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dataFrames
DataFrame[] dataFrames
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fields
Fields fields
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prefix
String prefix
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variantTypeCounter
VariantTypeCounter variantTypeCounter
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Package org.snpsift.annotate.mem.dataFrame
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Class org.snpsift.annotate.mem.dataFrame.DataFrame
class DataFrame extends Object implements Serializable- serialVersionUID:
- 2024073101L
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Serialized Fields
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alts
StringArray alts
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columns
Map<String,
DataFrameColumn<?>> columns -
currentIdx
int currentIdx
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fields
Fields fields
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posIndex
PosIndex posIndex
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refs
StringArray refs
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variantCategory
VariantCategory variantCategory
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variantTypeCounter
VariantTypeCounter variantTypeCounter
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Class org.snpsift.annotate.mem.dataFrame.DataFrameDel
class DataFrameDel extends DataFrame implements Serializable- serialVersionUID:
- 2024073102L
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Class org.snpsift.annotate.mem.dataFrame.DataFrameIns
class DataFrameIns extends DataFrame implements Serializable- serialVersionUID:
- 2024073103L
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Class org.snpsift.annotate.mem.dataFrame.DataFrameMixed
class DataFrameMixed extends DataFrame implements Serializable- serialVersionUID:
- 2024073104L
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Class org.snpsift.annotate.mem.dataFrame.DataFrameMnp
class DataFrameMnp extends DataFrame implements Serializable- serialVersionUID:
- 2024073105L
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Class org.snpsift.annotate.mem.dataFrame.DataFrameOther
class DataFrameOther extends DataFrame implements Serializable- serialVersionUID:
- 2024073106L
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Class org.snpsift.annotate.mem.dataFrame.DataFrameRow
class DataFrameRow extends Object implements Serializable- serialVersionUID:
- 2024073108L
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Class org.snpsift.annotate.mem.dataFrame.DataFrameSnp
class DataFrameSnp extends DataFrame implements Serializable- serialVersionUID:
- 2024073109L
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Serialized Fields
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alt
String alt
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Package org.snpsift.annotate.mem.dataFrame.dataFrameColumn
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumn
class DataFrameColumn extends Object implements Serializable- serialVersionUID:
- 2024073103L
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnBool
- serialVersionUID:
- 202407310301L
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Serialized Fields
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data
BoolArray data
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnChar
- serialVersionUID:
- 202407310302L
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Serialized Fields
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data
char[] data
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnDouble
- serialVersionUID:
- 202407310303L
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Serialized Fields
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data
double[] data
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnInt
- serialVersionUID:
- 202407310304L
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Serialized Fields
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data
int[] data
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnLong
- serialVersionUID:
- 202407310305L
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Serialized Fields
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data
long[] data
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Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnString
- serialVersionUID:
- 202407310306L
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Serialized Fields
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data
StringArrayBase data
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Package org.snpsift.annotate.mem.variantTypeCounter
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Class org.snpsift.annotate.mem.variantTypeCounter.VariantTypeCounter
class VariantTypeCounter extends Object implements Serializable- serialVersionUID:
- 2024073102L
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Package org.snpsift.fileIterator
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Class org.snpsift.fileIterator.DbNsfpEntry
class DbNsfpEntry extends org.snpeff.interval.Variant implements Serializable- serialVersionUID:
- -3275792763917755927L
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