Uses of Enum Class
org.snpsift.annotate.mem.VariantCategory
Packages that use VariantCategory
Package
Description
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Uses of VariantCategory in org.snpsift.annotate.mem
Methods in org.snpsift.annotate.mem that return VariantCategoryModifier and TypeMethodDescriptionstatic VariantCategory
VariantCategory.of
(org.snpeff.interval.Variant variant) static VariantCategory
Returns the enum constant of this class with the specified name.static VariantCategory[]
VariantCategory.values()
Returns an array containing the constants of this enum class, in the order they are declared. -
Uses of VariantCategory in org.snpsift.annotate.mem.database
Methods in org.snpsift.annotate.mem.database with parameters of type VariantCategoryModifier and TypeMethodDescriptionVariantDataFrame.getDataFrameByCategory
(VariantCategory category) -
Uses of VariantCategory in org.snpsift.annotate.mem.dataFrame
Constructors in org.snpsift.annotate.mem.dataFrame with parameters of type VariantCategoryModifierConstructorDescriptionDataFrame
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory, boolean hasRefs, boolean hasAlts) DataFrameDel
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameIns
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameMixed
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameMnp
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameOther
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameSnp
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) -
Uses of VariantCategory in org.snpsift.annotate.mem.variantTypeCounter
Methods in org.snpsift.annotate.mem.variantTypeCounter with parameters of type VariantCategoryModifier and TypeMethodDescriptionint
VariantTypeCounter.getCount
(VariantCategory variantCategory) int
VariantTypeCounter.getSize
(VariantCategory variantCategory, String field) Get total size (in bytes) of a field (only string fields)protected void
VariantTypeCounter.updateSizes
(VariantCategory variantCategory, String field, String value) Update sizes for a field -
Uses of VariantCategory in org.snpsift.util
Methods in org.snpsift.util with parameters of type VariantCategoryModifier and TypeMethodDescriptionRandomUtil.randVariant
(VariantCategory variantCategory) RandomUtil.randVariantAlt
(VariantCategory variantCategory, String ref) RandomUtil.randVariantRef
(VariantCategory variantCategory)