Package org.snpsift.annotate.mem
Class Zzz
java.lang.Object
org.snpsift.annotate.mem.Zzz
Test: This class loaads a "database" VCF file and then annotates another VCF file.
Chromosome aliases file: http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/chromAlias.txt.gz
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Field Summary
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
benchmarkSortedVariantsVcfIterator
(String databaseFileName) void
benchmarkVcfIterator
(String databaseFileName) static void
Main
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Field Details
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CHR1_NUM_ENTRIES
public static final int CHR1_NUM_ENTRIES- See Also:
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Constructor Details
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Zzz
public Zzz()
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Method Details
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main
Main -
benchmarkSortedVariantsVcfIterator
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benchmarkVcfIterator
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